phangorn: phylogenetic analysis in R
نویسندگان
چکیده
منابع مشابه
phangorn: phylogenetic analysis in R
SUMMARY phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with distance methods in R. phangorn, now offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing Hadamard conjugation. Extending the general ML framework...
متن کاملEstimating phylogenetic trees with phangorn
These notes should enable the user to estimate phylogenetic trees from alignment data with different methods using the phangorn package [10]. Several functions of phangorn are also described in more detail in [6]. For more theoretical background on all the methods see e.g. [2, 12]. This document illustrates some of the phangorn features to estimate phylogenetic trees using different reconstruct...
متن کاملEstimating phylogenetic trees with phangorn (Version 1.7-0)
These notes should enable the user to estimate phylogenetic trees from alignment data with different methods using the phangorn package [10]. Several functions of phangorn are also described in more detail in [6]. For more theoretical background on all the methods see e.g. [2, 12]. This document illustrates some of the phangorn features to estimate phylogenetic trees using different reconstruct...
متن کاملEstimating phylogenetic trees with phangorn (Version 1.3-1)
These notes should enable the user to estimate phylogenetic trees from alignment data with different methods using the phangorn package [7]. For more background on all the methods see e.g. [2, 9]. This document illustrates some of the phangorn features to estimate phylogenetic trees using different reconstruction methods. Small adaptations to the scripts in section 6 should enable the user to p...
متن کاملEstimating phylogenetic trees with phangorn (Version 1.0-2)
These notes should enable the user to estimate phylogenetic trees from alignment data with different methods using the phangorn package. For more background on all the methods see e.g. [2, 7]. This document illustrates some of the phangorn features to estimate phylogenetic trees using different reconstruction methods. Small adaptations to the scripts in section 6 should enable the user to perfo...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2010
ISSN: 1460-2059,1367-4803
DOI: 10.1093/bioinformatics/btq706